Can't stop Home Assistant OS VM

Hi, since a few days I’ve got incus running on a Pi5 (latest Pi OS). Launching VMs and containers seems to be running fine.

I’ve also setup a VM to run Home Assistant OS. Launching that VM was fine, but I’ve an issue with stopping the VM.
From the incus host I’ve to use a forced stop otherwise the VM keeps running. The other way is to issue a shutdown inside the Home Assistant OS console.

Executing incus stop hass --debug results in a timeout as can be seen below.

Linux pi-lxc 6.6.51+rpt-rpi-2712 #1 SMP PREEMPT Debian 1:6.6.51-1+rpt3 (2024-10-08) aarch64

root@pi-lxc:~# incus info hass
Name: hass
Status: RUNNING
Type: virtual-machine
Architecture: aarch64
PID: 12529
Created: 2024/11/12 19:33 CET
Last Used: 2024/11/13 08:31 CET
Started: 2024/11/13 08:31 CET

Resources:
  Processes: -1
  Disk usage:
    root: 5.18GiB
  Network usage:
    eth0:
      Type: broadcast
      State: UP
      Host interface: tap8bd5ded3
      MAC address: 00:16:3e:20:02:af
      MTU: 1500
      Bytes received: 47.26MB
      Bytes sent: 3.92MB
      Packets received: 288834
      Packets sent: 23422
      IP addresses:
        inet:  192.168.64.131/ (global)
root@pi-lxc:~#
root@pi-lxc:~#
root@pi-lxc:~# incus stop hass --debug
DEBUG  [2024-11-13T16:40:27+01:00] Connecting to a local Incus over a Unix socket
DEBUG  [2024-11-13T16:40:27+01:00] Sending request to Incus                      etag= method=GET url="http://unix.socket/1.0"
DEBUG  [2024-11-13T16:40:27+01:00] Got response struct from Incus
DEBUG  [2024-11-13T16:40:27+01:00]
        {
                "config": {
                        "core.https_address": "[::]:8443"
                },
                "api_extensions": [
                        "storage_zfs_remove_snapshots",
                        "container_host_shutdown_timeout",
                        "container_stop_priority",
                        "container_syscall_filtering",
                        "auth_pki",
                        "container_last_used_at",
                        "etag",
                        "patch",
                        "usb_devices",
                        "https_allowed_credentials",
                        "image_compression_algorithm",
                        "directory_manipulation",
                        "container_cpu_time",
                        "storage_zfs_use_refquota",
                        "storage_lvm_mount_options",
                        "network",
                        "profile_usedby",
                        "container_push",
                        "container_exec_recording",
                        "certificate_update",
                        "container_exec_signal_handling",
                        "gpu_devices",
                        "container_image_properties",
                        "migration_progress",
                        "id_map",
                        "network_firewall_filtering",
                        "network_routes",
                        "storage",
                        "file_delete",
                        "file_append",
                        "network_dhcp_expiry",
                        "storage_lvm_vg_rename",
                        "storage_lvm_thinpool_rename",
                        "network_vlan",
                        "image_create_aliases",
                        "container_stateless_copy",
                        "container_only_migration",
                        "storage_zfs_clone_copy",
                        "unix_device_rename",
                        "storage_lvm_use_thinpool",
                        "storage_rsync_bwlimit",
                        "network_vxlan_interface",
                        "storage_btrfs_mount_options",
                        "entity_description",
                        "image_force_refresh",
                        "storage_lvm_lv_resizing",
                        "id_map_base",
                        "file_symlinks",
                        "container_push_target",
                        "network_vlan_physical",
                        "storage_images_delete",
                        "container_edit_metadata",
                        "container_snapshot_stateful_migration",
                        "storage_driver_ceph",
                        "storage_ceph_user_name",
                        "resource_limits",
                        "storage_volatile_initial_source",
                        "storage_ceph_force_osd_reuse",
                        "storage_block_filesystem_btrfs",
                        "resources",
                        "kernel_limits",
                        "storage_api_volume_rename",
                        "network_sriov",
                        "console",
                        "restrict_dev_incus",
                        "migration_pre_copy",
                        "infiniband",
                        "dev_incus_events",
                        "proxy",
                        "network_dhcp_gateway",
                        "file_get_symlink",
                        "network_leases",
                        "unix_device_hotplug",
                        "storage_api_local_volume_handling",
                        "operation_description",
                        "clustering",
                        "event_lifecycle",
                        "storage_api_remote_volume_handling",
                        "nvidia_runtime",
                        "container_mount_propagation",
                        "container_backup",
                        "dev_incus_images",
                        "container_local_cross_pool_handling",
                        "proxy_unix",
                        "proxy_udp",
                        "clustering_join",
                        "proxy_tcp_udp_multi_port_handling",
                        "network_state",
                        "proxy_unix_dac_properties",
                        "container_protection_delete",
                        "unix_priv_drop",
                        "pprof_http",
                        "proxy_haproxy_protocol",
                        "network_hwaddr",
                        "proxy_nat",
                        "network_nat_order",
                        "container_full",
                        "backup_compression",
                        "nvidia_runtime_config",
                        "storage_api_volume_snapshots",
                        "storage_unmapped",
                        "projects",
                        "network_vxlan_ttl",
                        "container_incremental_copy",
                        "usb_optional_vendorid",
                        "snapshot_scheduling",
                        "snapshot_schedule_aliases",
                        "container_copy_project",
                        "clustering_server_address",
                        "clustering_image_replication",
                        "container_protection_shift",
                        "snapshot_expiry",
                        "container_backup_override_pool",
                        "snapshot_expiry_creation",
                        "network_leases_location",
                        "resources_cpu_socket",
                        "resources_gpu",
                        "resources_numa",
                        "kernel_features",
                        "id_map_current",
                        "event_location",
                        "storage_api_remote_volume_snapshots",
                        "network_nat_address",
                        "container_nic_routes",
                        "cluster_internal_copy",
                        "seccomp_notify",
                        "lxc_features",
                        "container_nic_ipvlan",
                        "network_vlan_sriov",
                        "storage_cephfs",
                        "container_nic_ipfilter",
                        "resources_v2",
                        "container_exec_user_group_cwd",
                        "container_syscall_intercept",
                        "container_disk_shift",
                        "storage_shifted",
                        "resources_infiniband",
                        "daemon_storage",
                        "instances",
                        "image_types",
                        "resources_disk_sata",
                        "clustering_roles",
                        "images_expiry",
                        "resources_network_firmware",
                        "backup_compression_algorithm",
                        "ceph_data_pool_name",
                        "container_syscall_intercept_mount",
                        "compression_squashfs",
                        "container_raw_mount",
                        "container_nic_routed",
                        "container_syscall_intercept_mount_fuse",
                        "container_disk_ceph",
                        "virtual-machines",
                        "image_profiles",
                        "clustering_architecture",
                        "resources_disk_id",
                        "storage_lvm_stripes",
                        "vm_boot_priority",
                        "unix_hotplug_devices",
                        "api_filtering",
                        "instance_nic_network",
                        "clustering_sizing",
                        "firewall_driver",
                        "projects_limits",
                        "container_syscall_intercept_hugetlbfs",
                        "limits_hugepages",
                        "container_nic_routed_gateway",
                        "projects_restrictions",
                        "custom_volume_snapshot_expiry",
                        "volume_snapshot_scheduling",
                        "trust_ca_certificates",
                        "snapshot_disk_usage",
                        "clustering_edit_roles",
                        "container_nic_routed_host_address",
                        "container_nic_ipvlan_gateway",
                        "resources_usb_pci",
                        "resources_cpu_threads_numa",
                        "resources_cpu_core_die",
                        "api_os",
                        "container_nic_routed_host_table",
                        "container_nic_ipvlan_host_table",
                        "container_nic_ipvlan_mode",
                        "resources_system",
                        "images_push_relay",
                        "network_dns_search",
                        "container_nic_routed_limits",
                        "instance_nic_bridged_vlan",
                        "network_state_bond_bridge",
                        "usedby_consistency",
                        "custom_block_volumes",
                        "clustering_failure_domains",
                        "resources_gpu_mdev",
                        "console_vga_type",
                        "projects_limits_disk",
                        "network_type_macvlan",
                        "network_type_sriov",
                        "container_syscall_intercept_bpf_devices",
                        "network_type_ovn",
                        "projects_networks",
                        "projects_networks_restricted_uplinks",
                        "custom_volume_backup",
                        "backup_override_name",
                        "storage_rsync_compression",
                        "network_type_physical",
                        "network_ovn_external_subnets",
                        "network_ovn_nat",
                        "network_ovn_external_routes_remove",
                        "tpm_device_type",
                        "storage_zfs_clone_copy_rebase",
                        "gpu_mdev",
                        "resources_pci_iommu",
                        "resources_network_usb",
                        "resources_disk_address",
                        "network_physical_ovn_ingress_mode",
                        "network_ovn_dhcp",
                        "network_physical_routes_anycast",
                        "projects_limits_instances",
                        "network_state_vlan",
                        "instance_nic_bridged_port_isolation",
                        "instance_bulk_state_change",
                        "network_gvrp",
                        "instance_pool_move",
                        "gpu_sriov",
                        "pci_device_type",
                        "storage_volume_state",
                        "network_acl",
                        "migration_stateful",
                        "disk_state_quota",
                        "storage_ceph_features",
                        "projects_compression",
                        "projects_images_remote_cache_expiry",
                        "certificate_project",
                        "network_ovn_acl",
                        "projects_images_auto_update",
                        "projects_restricted_cluster_target",
                        "images_default_architecture",
                        "network_ovn_acl_defaults",
                        "gpu_mig",
                        "project_usage",
                        "network_bridge_acl",
                        "warnings",
                        "projects_restricted_backups_and_snapshots",
                        "clustering_join_token",
                        "clustering_description",
                        "server_trusted_proxy",
                        "clustering_update_cert",
                        "storage_api_project",
                        "server_instance_driver_operational",
                        "server_supported_storage_drivers",
                        "event_lifecycle_requestor_address",
                        "resources_gpu_usb",
                        "clustering_evacuation",
                        "network_ovn_nat_address",
                        "network_bgp",
                        "network_forward",
                        "custom_volume_refresh",
                        "network_counters_errors_dropped",
                        "metrics",
                        "image_source_project",
                        "clustering_config",
                        "network_peer",
                        "linux_sysctl",
                        "network_dns",
                        "ovn_nic_acceleration",
                        "certificate_self_renewal",
                        "instance_project_move",
                        "storage_volume_project_move",
                        "cloud_init",
                        "network_dns_nat",
                        "database_leader",
                        "instance_all_projects",
                        "clustering_groups",
                        "ceph_rbd_du",
                        "instance_get_full",
                        "qemu_metrics",
                        "gpu_mig_uuid",
                        "event_project",
                        "clustering_evacuation_live",
                        "instance_allow_inconsistent_copy",
                        "network_state_ovn",
                        "storage_volume_api_filtering",
                        "image_restrictions",
                        "storage_zfs_export",
                        "network_dns_records",
                        "storage_zfs_reserve_space",
                        "network_acl_log",
                        "storage_zfs_blocksize",
                        "metrics_cpu_seconds",
                        "instance_snapshot_never",
                        "certificate_token",
                        "instance_nic_routed_neighbor_probe",
                        "event_hub",
                        "agent_nic_config",
                        "projects_restricted_intercept",
                        "metrics_authentication",
                        "images_target_project",
                        "images_all_projects",
                        "cluster_migration_inconsistent_copy",
                        "cluster_ovn_chassis",
                        "container_syscall_intercept_sched_setscheduler",
                        "storage_lvm_thinpool_metadata_size",
                        "storage_volume_state_total",
                        "instance_file_head",
                        "instances_nic_host_name",
                        "image_copy_profile",
                        "container_syscall_intercept_sysinfo",
                        "clustering_evacuation_mode",
                        "resources_pci_vpd",
                        "qemu_raw_conf",
                        "storage_cephfs_fscache",
                        "network_load_balancer",
                        "vsock_api",
                        "instance_ready_state",
                        "network_bgp_holdtime",
                        "storage_volumes_all_projects",
                        "metrics_memory_oom_total",
                        "storage_buckets",
                        "storage_buckets_create_credentials",
                        "metrics_cpu_effective_total",
                        "projects_networks_restricted_access",
                        "storage_buckets_local",
                        "loki",
                        "acme",
                        "internal_metrics",
                        "cluster_join_token_expiry",
                        "remote_token_expiry",
                        "init_preseed",
                        "storage_volumes_created_at",
                        "cpu_hotplug",
                        "projects_networks_zones",
                        "network_txqueuelen",
                        "cluster_member_state",
                        "instances_placement_scriptlet",
                        "storage_pool_source_wipe",
                        "zfs_block_mode",
                        "instance_generation_id",
                        "disk_io_cache",
                        "amd_sev",
                        "storage_pool_loop_resize",
                        "migration_vm_live",
                        "ovn_nic_nesting",
                        "oidc",
                        "network_ovn_l3only",
                        "ovn_nic_acceleration_vdpa",
                        "cluster_healing",
                        "instances_state_total",
                        "auth_user",
                        "security_csm",
                        "instances_rebuild",
                        "numa_cpu_placement",
                        "custom_volume_iso",
                        "network_allocations",
                        "zfs_delegate",
                        "storage_api_remote_volume_snapshot_copy",
                        "operations_get_query_all_projects",
                        "metadata_configuration",
                        "syslog_socket",
                        "event_lifecycle_name_and_project",
                        "instances_nic_limits_priority",
                        "disk_initial_volume_configuration",
                        "operation_wait",
                        "image_restriction_privileged",
                        "cluster_internal_custom_volume_copy",
                        "disk_io_bus",
                        "storage_cephfs_create_missing",
                        "instance_move_config",
                        "ovn_ssl_config",
                        "certificate_description",
                        "disk_io_bus_virtio_blk",
                        "loki_config_instance",
                        "instance_create_start",
                        "clustering_evacuation_stop_options",
                        "boot_host_shutdown_action",
                        "agent_config_drive",
                        "network_state_ovn_lr",
                        "image_template_permissions",
                        "storage_bucket_backup",
                        "storage_lvm_cluster",
                        "shared_custom_block_volumes",
                        "auth_tls_jwt",
                        "oidc_claim",
                        "device_usb_serial",
                        "numa_cpu_balanced",
                        "image_restriction_nesting",
                        "network_integrations",
                        "instance_memory_swap_bytes",
                        "network_bridge_external_create",
                        "network_zones_all_projects",
                        "storage_zfs_vdev",
                        "container_migration_stateful",
                        "profiles_all_projects",
                        "instances_scriptlet_get_instances",
                        "instances_scriptlet_get_cluster_members",
                        "instances_scriptlet_get_project",
                        "network_acl_stateless",
                        "instance_state_started_at",
                        "networks_all_projects",
                        "network_acls_all_projects",
                        "storage_buckets_all_projects",
                        "resources_load",
                        "instance_access",
                        "project_access",
                        "projects_force_delete",
                        "resources_cpu_flags",
                        "disk_io_bus_cache_filesystem",
                        "instance_oci",
                        "clustering_groups_config",
                        "instances_lxcfs_per_instance",
                        "clustering_groups_vm_cpu_definition",
                        "disk_volume_subpath",
                        "projects_limits_disk_pool",
                        "network_ovn_isolated",
                        "qemu_raw_qmp",
                        "network_load_balancer_health_check",
                        "oidc_scopes",
                        "network_integrations_peer_name",
                        "qemu_scriptlet",
                        "instance_auto_restart",
                        "storage_lvm_metadatasize",
                        "ovn_nic_promiscuous",
                        "ovn_nic_ip_address_none",
                        "instances_state_os_info",
                        "network_load_balancer_state",
                        "instance_nic_macvlan_mode",
                        "storage_lvm_cluster_create",
                        "network_ovn_external_interfaces"
                ],
                "api_status": "stable",
                "api_version": "1.0",
                "auth": "trusted",
                "public": false,
                "auth_methods": [
                        "tls"
                ],
                "auth_user_name": "root",
                "auth_user_method": "unix",
                "environment": {
                        "addresses": [
                                "192.168.64.62:8443",
                                "[fdcc:4edc:b94c:0:2ecf:67ff:fe7e:a5d2]:8443",
                                "[2003:d0:f31:5400:2ecf:67ff:fe7e:a5d2]:8443",
                                "10.118.126.1:8443"
                        ],
                        "architectures": [
                                "aarch64",
                                "armv6l",
                                "armv7l",
                                "armv8l"
                        ],
                        "certificate": "-----BEGIN CERTIFICATE-----\nMIIB/TCCAYOgAwIBAgIQDmTBffZBpn9KcaSo+vou2zAKBggqhkjOPQQDAzAxMRkw\nFwYDVQ
...
a2IKW6yDjS\nCeHVuafphiHyLLXsLPUXmRaVbRJUc+pXmLWOjdQXZkxJ\n-----END CERTIFICATE-----\n",
                        "certificate_fingerprint": "...",
                        "driver": "lxc | qemu",
                        "driver_version": "6.0.2 | 9.0.2",
                        "firewall": "nftables",
                        "kernel": "Linux",
                        "kernel_architecture": "aarch64",
                        "kernel_features": {
                                "idmapped_mounts": "true",
                                "netnsid_getifaddrs": "true",
                                "seccomp_listener": "true",
                                "seccomp_listener_continue": "true",
                                "uevent_injection": "true",
                                "unpriv_binfmt": "false",
                                "unpriv_fscaps": "true"
                        },
                        "kernel_version": "6.6.51+rpt-rpi-2712",
                        "lxc_features": {
                                "cgroup2": "true",
                                "core_scheduling": "true",
                                "devpts_fd": "true",
                                "idmapped_mounts_v2": "true",
                                "mount_injection_file": "true",
                                "network_gateway_device_route": "true",
                                "network_ipvlan": "true",
                                "network_l2proxy": "true",
                                "network_phys_macvlan_mtu": "true",
                                "network_veth_router": "true",
                                "pidfd": "true",
                                "seccomp_allow_deny_syntax": "true",
                                "seccomp_notify": "true",
                                "seccomp_proxy_send_notify_fd": "true"
                        },
                        "os_name": "Debian GNU/Linux",
                        "os_version": "12",
                        "project": "default",
                        "server": "incus",
                        "server_clustered": false,
                        "server_event_mode": "full-mesh",
                        "server_name": "pi-lxc",
                        "server_pid": 812,
                        "server_version": "6.6",
                        "storage": "btrfs",
                        "storage_version": "6.2",
                        "storage_supported_drivers": [
                                {
                                        "Name": "dir",
                                        "Version": "1",
                                        "Remote": false
                                },
                                {
                                        "Name": "btrfs",
                                        "Version": "6.2",
                                        "Remote": false
                                }
                        ]
                }
        }
DEBUG  [2024-11-13T16:40:27+01:00] Connected to the websocket: ws://unix.socket/1.0/events
DEBUG  [2024-11-13T16:40:27+01:00] Sending request to Incus                      etag= method=PUT url="http://unix.socket/1.0/instances/hass/state"
DEBUG  [2024-11-13T16:40:27+01:00]
        {
                "action": "stop",
                "timeout": -1,
                "force": false,
                "stateful": false
        }
DEBUG  [2024-11-13T16:40:27+01:00] Got operation from Incus
DEBUG  [2024-11-13T16:40:27+01:00]
        {
                "id": "8f876acb-46e9-4cef-9c79-34f5c95e674d",
                "class": "task",
                "description": "Stopping instance",
                "created_at": "2024-11-13T16:40:27.165332325+01:00",
                "updated_at": "2024-11-13T16:40:27.165332325+01:00",
                "status": "Running",
                "status_code": 103,
                "resources": {
                        "instances": [
                                "/1.0/instances/hass"
                        ]
                },
                "metadata": null,
                "may_cancel": false,
                "err": "",
                "location": "none"
        }
DEBUG  [2024-11-13T16:40:27+01:00] Sending request to Incus                      etag= method=GET url="http://unix.socket/1.0/operations/8f876acb-46e9-4cef-9c79-34f5c95e674d"
DEBUG  [2024-11-13T16:40:27+01:00] Got response struct from Incus
DEBUG  [2024-11-13T16:40:27+01:00]
        {
                "id": "8f876acb-46e9-4cef-9c79-34f5c95e674d",
                "class": "task",
                "description": "Stopping instance",
                "created_at": "2024-11-13T16:40:27.165332325+01:00",
                "updated_at": "2024-11-13T16:40:27.165332325+01:00",
                "status": "Running",
                "status_code": 103,
                "resources": {
                        "instances": [
                                "/1.0/instances/hass"
                        ]
                },
                "metadata": null,
                "may_cancel": false,
                "err": "",
                "location": "none"
        }
Error: Failed shutting down instance, status is "Running": context deadline exceeded
Try `incus info --show-log hass` for more info
root@pi-lxc:~#

I’m not sure if this related to missing incus agent in the VM (the qemu guest agent seems to be integrated into Home Assistant OS) or what may be missing else.